Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pestis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pestis; x__Yersinia pestis PY-54
NCBI Strain Identifiers PY-54
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 1.04%
CheckM Strain Heterogeneity 66.67
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 1,330
N50 Contigs 7,526 bp
Longest Contig 41,306 bp
Scaffold Count 1,330
N50 Scaffolds 7,526 bp
Longest Scaffold 41,306 bp
Genome Size 4,604,232 bp
Protein Count 4,546
Coding Density 84.25%
GC Percentage 47.73%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM26880v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02141477
Country Peru:Ascope; Chicama; Sector Peaje
Date 2012-6-15
Genbank Assembly Accession GCA_000268805.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood [ENVO:02000020]
Latitude Longitude None
Molecule Count N/A
CDS Count 4,749
Refseq Category na
Seq Rel Date 2012/06/15
Spanned Gaps 0
Species Taxid 632
SSU Count 1
Submitter Institute for Genome Sciences
Taxid 992156
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKSP00000000.1