Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli EPEC C342-62
NCBI Strain Identifiers C342-62
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 50.0
5S Count 12
16S Count 12
23S Count 12
tRNA Count 20
Contig Count 47
N50 Contigs 336,378 bp
Longest Contig 457,181 bp
Scaffold Count 47
N50 Scaffolds 336,378 bp
Longest Scaffold 457,181 bp
Genome Size 5,242,442 bp
Protein Count 5,136
Coding Density 86.84%
GC Percentage 50.60%
Ambiguous Bases 1
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM26820v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00017229
Country None
Date 2012-06-14
Genbank Assembly Accession GCA_000268205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,213
Refseq Category na
Seq Rel Date 2012/06/14
Spanned Gaps 0
Species Taxid 562
SSU Count 12
Submitter Institute for Genome Sciences
Taxid 766166
Total Gap Length 0
Translation Table 11
tRNA Count (total) 98
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKNI00000000.1