Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli PA39
NCBI Strain Identifiers PA39
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.79%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 4
23S Count 2
tRNA Count 20
Contig Count 888
N50 Contigs 28,729 bp
Longest Contig 104,709 bp
Scaffold Count 794
N50 Scaffolds 30,758 bp
Longest Scaffold 110,653 bp
Genome Size 5,364,936 bp
Protein Count 5,500
Coding Density 86.81%
GC Percentage 50.52%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM26768v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02435919
Country USA
Date 2012-6-15
Genbank Assembly Accession GCA_000267685.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,981
Refseq Category na
Seq Rel Date 2012/06/15
Spanned Gaps 94
Species Taxid 562
SSU Count 5
Submitter Institute for Genome Sciences
Taxid 1005507
Total Gap Length 6456
Translation Table 11
tRNA Count (total) 94
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKLP00000000.1