Escherichia dysenteriae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli EC4013
NCBI Strain Identifiers EC4013
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 3
tRNA Count 19
Contig Count 462
N50 Contigs 142,490 bp
Longest Contig 311,842 bp
Scaffold Count 399
N50 Scaffolds 170,047 bp
Longest Scaffold 440,729 bp
Genome Size 5,349,923 bp
Protein Count 5,359
Coding Density 87.32%
GC Percentage 50.28%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM26734v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02435923
Country USA
Date 2012-6-15
Genbank Assembly Accession GCA_000267345.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,858
Refseq Category na
Seq Rel Date 2012/06/15
Spanned Gaps 63
Species Taxid 562
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1005529
Total Gap Length 3285
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKMH00000000.1