Xanthomonas phaseoli
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas phaseoli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas phaseoli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas phaseoli; x__Xanthomonas phaseoli pv. manihotis; x__Xanthomonas axonopodis pv. manihotis str. UG39
NCBI Strain Identifiers UG39
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003999565.1)
Genome Characteristics
CheckM Completeness 99.88%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 130
N50 Contigs 74,207 bp
Longest Contig 237,280 bp
Scaffold Count 130
N50 Scaffolds 74,207 bp
Longest Scaffold 237,280 bp
Genome Size 4,911,502 bp
Protein Count 4,156
Coding Density 85.30%
GC Percentage 65.03%
Ambiguous Bases N/A
GTDB representative GCA_003999565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name UG39
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01090356
Country Uganda
Date 2012-06-11
Genbank Assembly Accession GCA_000266545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,314
Refseq Category na
Seq Rel Date 2012/06/11
Spanned Gaps 0
Species Taxid 1985254
SSU Count 1
Submitter University of California, Berkeley
Taxid 1185711
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKEZ00000000.1