Xanthomonas phaseoli
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas phaseoli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas phaseoli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas phaseoli; x__Xanthomonas phaseoli pv. manihotis; x__Xanthomonas axonopodis pv. manihotis str. IBSBF 278
NCBI Strain Identifiers IBSBF 278
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003999565.1)
Genome Characteristics
CheckM Completeness 99.88%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 138
N50 Contigs 88,339 bp
Longest Contig 239,334 bp
Scaffold Count 138
N50 Scaffolds 88,339 bp
Longest Scaffold 239,334 bp
Genome Size 5,020,210 bp
Protein Count 4,314
Coding Density 85.30%
GC Percentage 64.89%
Ambiguous Bases N/A
GTDB representative GCA_003999565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name IBSBF278
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01090319
Country Brazil
Date 2012-06-11
Genbank Assembly Accession GCA_000266045.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,456
Refseq Category na
Seq Rel Date 2012/06/11
Spanned Gaps 0
Species Taxid 1985254
SSU Count 1
Submitter University of California, Berkeley
Taxid 1185683
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKDO00000000.1