Rhodococcus opacus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Rhodococcus; s__Rhodococcus opacus
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus opacus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus opacus; x__Rhodococcus opacus M213
NCBI Strain Identifiers M213
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001646735.1)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 2.99%
CheckM Strain Heterogeneity 16.67
5S Count 1
16S Count 3
23S Count 4
tRNA Count 20
Contig Count 483
N50 Contigs 79,111 bp
Longest Contig 286,330 bp
Scaffold Count 483
N50 Scaffolds 79,111 bp
Longest Scaffold 286,330 bp
Genome Size 9,194,165 bp
Protein Count 8,859
Coding Density 88.45%
GC Percentage 66.99%
Ambiguous Bases N/A
GTDB representative GCA_001646735.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM26474v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469789
Country USA: Idaho
Date 2012-11-14
Genbank Assembly Accession GCA_000264745.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fuel-oil contaminated soil
Latitude Longitude None
Molecule Count N/A
CDS Count 8,854
Refseq Category na
Seq Rel Date 2012/11/14
Spanned Gaps 0
Species Taxid 37919
SSU Count 3
Submitter University of Illinois at Chicago
Taxid 1129896
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJYC00000000.2