Rhodococcus jostii_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Rhodococcus; s__Rhodococcus jostii_A
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus sp. DK17
NCBI Strain Identifiers DK17
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000014565.1)
Genome Characteristics
CheckM Completeness 99.19%
CheckM Contamination 2.63%
CheckM Strain Heterogeneity 7.69
5S Count 4
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 135
N50 Contigs 149,636 bp
Longest Contig 391,540 bp
Scaffold Count 135
N50 Scaffolds 149,636 bp
Longest Scaffold 391,540 bp
Genome Size 9,107,362 bp
Protein Count 8,639
Coding Density 88.75%
GC Percentage 67.15%
Ambiguous Bases N/A
GTDB representative GCA_000014565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name RhoDK17.2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02472143
Country South Korea
Date 2012-05-23
Genbank Assembly Accession GCA_000263875.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source crude oil-contaminated soil
Latitude Longitude None
Molecule Count N/A
CDS Count 8,558
Refseq Category na
Seq Rel Date 2012/05/23
Spanned Gaps 0
Species Taxid 186196
SSU Count 3
Submitter Yonsei University
Taxid 186196
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJLQ00000000.1