Hydrogenophaga intermedia
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Hydrogenophaga; s__Hydrogenophaga intermedia
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Hydrogenophaga; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Hydrogenophaga; s__Hydrogenophaga sp. PBC
NCBI Strain Identifiers PBC
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000723405.1)
Genome Characteristics
CheckM Completeness 99.3%
CheckM Contamination 0.58%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1
N50 Contigs 5,232,477 bp
Longest Contig 5,232,477 bp
Scaffold Count 1
N50 Scaffolds 5,232,477 bp
Longest Scaffold 5,232,477 bp
Genome Size 5,232,477 bp
Protein Count 5,000
Coding Density 92.70%
GC Percentage 68.39%
Ambiguous Bases N/A
GTDB representative GCA_000723405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name Hint_PBC
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471431
Country Malaysia: Johor
Date 2016-9-28
Genbank Assembly Accession GCA_000263795.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source textile wastewater
Latitude Longitude None
Molecule Count 1
CDS Count 5,008
Refseq Category na
Seq Rel Date 2016/09/28
Spanned Gaps 0
Species Taxid 795665
SSU Count 1
Submitter Universiti Teknologi Malaysia
Taxid 795665
Total Gap Length 0
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None