Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli B799
NCBI Strain Identifiers B799
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.1%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 3
23S Count 4
tRNA Count 19
Contig Count 78
N50 Contigs 236,398 bp
Longest Contig 412,332 bp
Scaffold Count 13
N50 Scaffolds 1,426,546 bp
Longest Scaffold 1,685,551 bp
Genome Size 5,393,412 bp
Protein Count 5,106
Coding Density 86.23%
GC Percentage 50.51%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_B799_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02596895
Country None
Date 2012-8-10
Genbank Assembly Accession GCA_000261385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,506
Refseq Category na
Seq Rel Date 2012/08/10
Spanned Gaps 65
Species Taxid 562
SSU Count 3
Submitter Broad Institute
Taxid 550682
Total Gap Length 95466
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AHWG00000000.1