Rhodococcus opacus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Rhodococcus; s__Rhodococcus opacus
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus imtechensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus imtechensis; x__Rhodococcus imtechensis RKJ300 = JCM 13270
NCBI Strain Identifiers RKJ300
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001646735.1)
Genome Characteristics
CheckM Completeness 92.58%
CheckM Contamination 1.93%
CheckM Strain Heterogeneity 14.29
5S Count 2
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 178
N50 Contigs 135,812 bp
Longest Contig 484,485 bp
Scaffold Count 178
N50 Scaffolds 135,812 bp
Longest Scaffold 484,485 bp
Genome Size 8,231,340 bp
Protein Count 8,003
Coding Density 87.79%
GC Percentage 67.22%
Ambiguous Bases 92
GTDB representative GCA_001646735.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM26081v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470011
Country India
Date 2012-04-10
Genbank Assembly Accession GCA_000260815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count N/A
CDS Count 7,940
Refseq Category na
Seq Rel Date 2012/04/10
Spanned Gaps 0
Species Taxid 262776
SSU Count 2
Submitter Institute of Microbial Technology(IMTECH)-CSIR,Sector 39A,Chandigarh,160036
Taxid 1165867
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AJJH00000000.1