Pseudomonas_E simiae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E simiae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. R81
NCBI Strain Identifiers R81
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900111895.1)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 151
N50 Contigs 71,332 bp
Longest Contig 234,873 bp
Scaffold Count 8
N50 Scaffolds 6,215,135 bp
Longest Scaffold 6,215,135 bp
Genome Size 6,225,770 bp
Protein Count 5,639
Coding Density 87.85%
GC Percentage 60.46%
Ambiguous Bases 2
GTDB representative GCA_900111895.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM25762v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471582
Country India: Bhawanipur of Uttar Pradesh
Date 2012-04-05
Genbank Assembly Accession GCA_000257625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,717
Refseq Category na
Seq Rel Date 2012/04/05
Spanned Gaps 143
Species Taxid 1144885
SSU Count 1
Submitter Botanical Institute
Taxid 1144885
Total Gap Length 93988
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AHZN00000000.1