Mycobacterium abscessus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium abscessus
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacteroides; s__Mycobacteroides abscessus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacteroides; s__Mycobacteroides abscessus; x__Mycobacteroides abscessus M93
NCBI Strain Identifiers M93
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000069185.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 41
N50 Contigs 413,197 bp
Longest Contig 1,142,716 bp
Scaffold Count 41
N50 Scaffolds 413,197 bp
Longest Scaffold 1,142,716 bp
Genome Size 5,073,598 bp
Protein Count 4,965
Coding Density 92.89%
GC Percentage 64.14%
Ambiguous Bases N/A
GTDB representative GCA_000069185.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM25722v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471415
Country Malaysia
Date 2012-03-30
Genbank Assembly Accession GCA_000257225.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum of a patient with lung infections
Latitude Longitude None
Molecule Count N/A
CDS Count 4,971
Refseq Category na
Seq Rel Date 2012/03/30
Spanned Gaps 0
Species Taxid 36809
SSU Count 1
Submitter Faculty of Dentistry, Universiti Malaya, Kuala Lumpur
Taxid 1149134
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJGF00000000.1