Hungateiclostridium thermocellum
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Acetivibrionales; f__Acetivibrionaceae; g__Hungateiclostridium; s__Hungateiclostridium thermocellum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Hungateiclostridiaceae; g__Hungateiclostridium; s__Hungateiclostridium thermocellum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Hungateiclostridiaceae; g__Hungateiclostridium; s__Hungateiclostridium thermocellum; x__Hungateiclostridium thermocellum YS
NCBI Strain Identifiers YS
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000015865.1)
Genome Characteristics
CheckM Completeness 99.33%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 100
N50 Contigs 126,840 bp
Longest Contig 330,620 bp
Scaffold Count 100
N50 Scaffolds 126,840 bp
Longest Scaffold 330,620 bp
Genome Size 3,464,366 bp
Protein Count 3,037
Coding Density 85.58%
GC Percentage 39.10%
Ambiguous Bases N/A
GTDB representative GCA_000015865.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM25557v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470754
Country USA: Wyoming
Date 2012-03-21
Genbank Assembly Accession GCA_000255575.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil samples obtained at the hot springs from Yellowstone National Park
Latitude Longitude None
Molecule Count N/A
CDS Count 2,997
Refseq Category na
Seq Rel Date 2012/03/21
Spanned Gaps 0
Species Taxid 1515
SSU Count 1
Submitter ORNL
Taxid 1094188
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJGT00000000.1