GTDB Taxonomy | d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli |
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Filtered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli |
Unfiltered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli; x__Campylobacter coli LMG 9860 |
NCBI Strain Identifiers | LMG 9860 |
GTDB Type Material Designation | type strain of species |
GTDB Representative of Species | True (775 genomes in species cluster) |
CheckM Completeness | 99.72% |
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CheckM Contamination | 0.11% |
CheckM Strain Heterogeneity | 0.0 |
5S Count | 0 |
16S Count | 1 |
23S Count | 1 |
tRNA Count | 18 |
Contig Count | 187 |
N50 Contigs | 42,746 bp |
Longest Contig | 125,993 bp |
Scaffold Count | 187 |
N50 Scaffolds | 42,746 bp |
Longest Scaffold | 125,993 bp |
Genome Size | 1,851,478 bp |
Protein Count | 2,044 |
Coding Density | 93.23% |
GC Percentage | 31.04% |
Ambiguous Bases | N/A |
GTDB representative of species | True |
Assembly Level | Contig |
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Assembly Name | ASM25413v2 |
Assembly Type | n/a |
Bioproject | PRJNA224116 |
Biosample | SAMN02428959 |
Country | Canada |
Date | 2012-03-16 |
Genbank Assembly Accession | GCA_000254135.2 |
Genome Category | Isolate |
Genome Representation | full |
Isolate | None |
Isolation Source | None |
Latitude Longitude | None |
Molecule Count | N/A |
CDS Count | 1,991 |
Refseq Category | na |
Seq Rel Date | 2012/03/16 |
Spanned Gaps | 0 |
Species Taxid | 195 |
SSU Count | 1 |
Submitter | Cornell University |
Taxid | 887308 |
Total Gap Length | 0 |
Translation Table | 11 |
tRNA Count (total) | 31 |
Type Material | assembly from type material |
Unspanned Gaps | 0 |
Version Status | latest |
WGS Master | AINS00000000.1 |