Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli; x__Campylobacter coli 317/04
NCBI Strain Identifiers 317/04;317;04
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.37%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 132
N50 Contigs 58,086 bp
Longest Contig 165,960 bp
Scaffold Count 132
N50 Scaffolds 58,086 bp
Longest Scaffold 165,960 bp
Genome Size 1,747,801 bp
Protein Count 1,899
Coding Density 93.29%
GC Percentage 31.03%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM25395v3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02428940
Country Poland
Date 2012-3-16
Genbank Assembly Accession GCA_000253955.3
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastrointestinal sample from 13 year old girl with watery diarrhea; fever; vomiting and abdominal pain; dehydration (coinfection with S. enteritidis)
Latitude Longitude None
Molecule Count N/A
CDS Count 1,844
Refseq Category na
Seq Rel Date 2012/03/16
Spanned Gaps 0
Species Taxid 195
SSU Count 1
Submitter Cornell University
Taxid 887300
Total Gap Length 0
Translation Table 11
tRNA Count (total) 31
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AINJ00000000.1