Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae; x__Streptococcus pneumoniae GA11856
NCBI Strain Identifiers GA11856
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 96.37%
CheckM Contamination 1.0%
CheckM Strain Heterogeneity 66.67
5S Count 3
16S Count 3
23S Count 3
tRNA Count 19
Contig Count 27
N50 Contigs 342,013 bp
Longest Contig 500,642 bp
Scaffold Count 27
N50 Scaffolds 342,013 bp
Longest Scaffold 500,642 bp
Genome Size 2,044,969 bp
Protein Count 2,058
Coding Density 85.38%
GC Percentage 39.79%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM25140v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00630314
Country None
Date 2012-03-07
Genbank Assembly Accession GCA_000251405.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,146
Refseq Category na
Seq Rel Date 2012/03/07
Spanned Gaps 0
Species Taxid 1313
SSU Count 3
Submitter Institute for Genome Sciences
Taxid 760766
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AIJV00000000.1