Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli DEC3A
NCBI Strain Identifiers DEC3A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 11
16S Count 14
23S Count 14
tRNA Count 20
Contig Count 61
N50 Contigs 289,141 bp
Longest Contig 522,728 bp
Scaffold Count 61
N50 Scaffolds 289,141 bp
Longest Scaffold 522,728 bp
Genome Size 5,445,263 bp
Protein Count 5,282
Coding Density 86.64%
GC Percentage 50.41%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM24925v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00191000
Country USA: WA
Date 2012-2-23
Genbank Assembly Accession GCA_000249255.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,679
Refseq Category na
Seq Rel Date 2012/02/23
Spanned Gaps 0
Species Taxid 562
SSU Count 14
Submitter Institute for Genome Sciences
Taxid 868143
Total Gap Length 0
Translation Table 11
tRNA Count (total) 112
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AIFE00000000.1