Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli DEC2E
NCBI Strain Identifiers DEC2E
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.63%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 12
16S Count 12
23S Count 13
tRNA Count 20
Contig Count 77
N50 Contigs 154,278 bp
Longest Contig 455,403 bp
Scaffold Count 77
N50 Scaffolds 154,278 bp
Longest Scaffold 455,403 bp
Genome Size 5,205,684 bp
Protein Count 5,110
Coding Density 86.54%
GC Percentage 50.52%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM24923v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00116899
Country USA: TX
Date 2012-02-23
Genbank Assembly Accession GCA_000249235.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,253
Refseq Category na
Seq Rel Date 2012/02/23
Spanned Gaps 0
Species Taxid 562
SSU Count 13
Submitter Institute for Genome Sciences
Taxid 868142
Total Gap Length 0
Translation Table 11
tRNA Count (total) 99
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AIFD00000000.1