Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli DEC1A
NCBI Strain Identifiers DEC1A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 98.56%
CheckM Contamination 0.12%
CheckM Strain Heterogeneity 66.67
5S Count 14
16S Count 14
23S Count 14
tRNA Count 20
Contig Count 63
N50 Contigs 190,474 bp
Longest Contig 527,282 bp
Scaffold Count 63
N50 Scaffolds 190,474 bp
Longest Scaffold 527,282 bp
Genome Size 5,108,720 bp
Protein Count 4,971
Coding Density 86.47%
GC Percentage 50.39%
Ambiguous Bases 3
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM24905v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00191023
Country USA: PA
Date 2012-2-23
Genbank Assembly Accession GCA_000249055.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source infant
Latitude Longitude None
Molecule Count N/A
CDS Count 5,355
Refseq Category na
Seq Rel Date 2012/02/23
Spanned Gaps 0
Species Taxid 562
SSU Count 14
Submitter Institute for Genome Sciences
Taxid 868133
Total Gap Length 0
Translation Table 11
tRNA Count (total) 93
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AIEV00000000.1