Campylobacter_D jejuni
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D jejuni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni; sb__Campylobacter jejuni subsp. jejuni; x__Campylobacter jejuni subsp. jejuni H22082
NCBI Strain Identifiers H22082
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457695.1)
Genome Characteristics
CheckM Completeness 99.5%
CheckM Contamination 0.5%
CheckM Strain Heterogeneity 60.0
5S Count 0
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 28
N50 Contigs 138,129 bp
Longest Contig 310,337 bp
Scaffold Count 28
N50 Scaffolds 138,129 bp
Longest Scaffold 310,337 bp
Genome Size 1,659,123 bp
Protein Count 1,702
Coding Density 93.53%
GC Percentage 30.58%
Ambiguous Bases N/A
GTDB representative GCA_001457695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM24239v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00113351
Country New Zealand: Palmerston North
Date 2012-01-11
Genbank Assembly Accession GCA_000242395.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fecal material from case of campylobacteroiosis
Latitude Longitude None
Molecule Count N/A
CDS Count 1,670
Refseq Category na
Seq Rel Date 2012/01/11
Spanned Gaps 0
Species Taxid 197
SSU Count 3
Submitter Institute of Veterinary, Animal and Biomedical Sciences, Massey University
Taxid 885274
Total Gap Length 0
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AEIP00000000.1