Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli H494
NCBI Strain Identifiers H494
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 3
23S Count 8
tRNA Count 20
Contig Count 114
N50 Contigs 113,602 bp
Longest Contig 321,389 bp
Scaffold Count 40
N50 Scaffolds 821,761 bp
Longest Scaffold 1,073,496 bp
Genome Size 5,107,409 bp
Protein Count 4,827
Coding Density 87.03%
GC Percentage 50.61%
Ambiguous Bases 3
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_H494_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02596701
Country None
Date 2012-1-10
Genbank Assembly Accession GCA_000242035.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,283
Refseq Category na
Seq Rel Date 2012/01/10
Spanned Gaps 74
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 656405
Total Gap Length 14213
Translation Table 11
tRNA Count (total) 88
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AFQH00000000.1