Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium avium
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium avium complex (MAC); s__Mycobacterium avium; sb__Mycobacterium avium subsp. paratuberculosis; x__Mycobacterium avium subsp. paratuberculosis Env 210
NCBI Strain Identifiers Env 210
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000174035.1)
Genome Characteristics
CheckM Completeness 98.86%
CheckM Contamination 1.6%
CheckM Strain Heterogeneity 22.22
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 538
N50 Contigs 17,776 bp
Longest Contig 102,012 bp
Scaffold Count 538
N50 Scaffolds 17,776 bp
Longest Scaffold 102,012 bp
Genome Size 4,736,143 bp
Protein Count 4,893
Coding Density 91.07%
GC Percentage 69.27%
Ambiguous Bases N/A
GTDB representative GCA_000174035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM24046v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02472020
Country None
Date 2011-12-29
Genbank Assembly Accession GCA_000240465.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil and untensils from dairy farm
Latitude Longitude None
Molecule Count N/A
CDS Count 4,841
Refseq Category na
Seq Rel Date 2011/12/29
Spanned Gaps 0
Species Taxid 1764
SSU Count 1
Submitter University of Wisconsin- Madison
Taxid 1078005
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AGAO00000000.1