Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. 2011V-1021
NCBI Strain Identifiers 2011V-1021
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 16
Contig Count 95
N50 Contigs 134,204 bp
Longest Contig 338,576 bp
Scaffold Count 95
N50 Scaffolds 134,204 bp
Longest Scaffold 338,576 bp
Genome Size 4,011,850 bp
Protein Count 3,570
Coding Density 87.80%
GC Percentage 47.51%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM23766v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00765521
Country Dominican Republic
Date 2011-12-12
Genbank Assembly Accession GCA_000237665.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample from patient with cholera
Latitude Longitude None
Molecule Count N/A
CDS Count 3,732
Refseq Category na
Seq Rel Date 2011/12/12
Spanned Gaps 0
Species Taxid 666
SSU Count 1
Submitter Public Health Agency of Canada
Taxid 1124485
Total Gap Length 0
Translation Table 11
tRNA Count (total) 64
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AHGK00000000.1