Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. 2011EL-1137
NCBI Strain Identifiers 2011EL-1137
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 16
Contig Count 72
N50 Contigs 197,656 bp
Longest Contig 501,901 bp
Scaffold Count 72
N50 Scaffolds 197,656 bp
Longest Scaffold 501,901 bp
Genome Size 4,018,022 bp
Protein Count 3,563
Coding Density 87.77%
GC Percentage 47.49%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM23764v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00765520
Country South Africa
Date 2011-12-12
Genbank Assembly Accession GCA_000237645.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample from patient with cholera
Latitude Longitude None
Molecule Count N/A
CDS Count 3,737
Refseq Category na
Seq Rel Date 2011/12/12
Spanned Gaps 0
Species Taxid 666
SSU Count 1
Submitter Public Health Agency of Canada
Taxid 1124483
Total Gap Length 0
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AHGJ00000000.1