Pseudomonas_E chlororaphis_F
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E chlororaphis_F
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas chlororaphis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas chlororaphis group; s__Pseudomonas chlororaphis; sb__Pseudomonas chlororaphis subsp. chlororaphis; x__Pseudomonas chlororaphis subsp. chlororaphis GP72
NCBI Strain Identifiers GP72
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003850345.1)
Genome Characteristics
CheckM Completeness 99.69%
CheckM Contamination 0.58%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 347
N50 Contigs 40,509 bp
Longest Contig 137,817 bp
Scaffold Count 347
N50 Scaffolds 40,509 bp
Longest Scaffold 137,817 bp
Genome Size 6,629,881 bp
Protein Count 6,089
Coding Density 88.15%
GC Percentage 63.13%
Ambiguous Bases N/A
GTDB representative GCA_003850345.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM23704v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470965
Country China: Shanghai
Date 2011-12-09
Genbank Assembly Accession GCA_000237045.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source green pepper rhizosphere
Latitude Longitude None
Molecule Count N/A
CDS Count 6,157
Refseq Category na
Seq Rel Date 2011/12/09
Spanned Gaps 0
Species Taxid 587753
SSU Count 1
Submitter Shanghai Jiao Tong University
Taxid 1117110
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AHAY00000000.1