Pediococcus acidilactici
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus acidilactici
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; s__Pediococcus acidilactici
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Pediococcus; x__Pediococcus acidilactici group; s__Pediococcus acidilactici; x__Pediococcus acidilactici MA18/5M
NCBI Strain Identifiers 5M;MA18/5M;MA18
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000146325.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 6
tRNA Count 20
Contig Count 10
N50 Contigs 395,998 bp
Longest Contig 679,252 bp
Scaffold Count 10
N50 Scaffolds 395,998 bp
Longest Scaffold 679,252 bp
Genome Size 1,989,583 bp
Protein Count 1,854
Coding Density 86.42%
GC Percentage 42.07%
Ambiguous Bases N/A
GTDB representative GCA_000146325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM23580v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469945
Country France
Date 2011-11-18
Genbank Assembly Accession GCA_000235805.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source pasture gramineae
Latitude Longitude None
Molecule Count N/A
CDS Count 1,860
Refseq Category na
Seq Rel Date 2011/11/18
Spanned Gaps 0
Species Taxid 1254
SSU Count 5
Submitter Institut Rosell Lallemand Inc.
Taxid 1080365
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AGKB00000000.1