Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae HC-43A1
NCBI Strain Identifiers HC-43A1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.8%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 8
23S Count 7
tRNA Count 18
Contig Count 19
N50 Contigs 974,901 bp
Longest Contig 1,096,197 bp
Scaffold Count 19
N50 Scaffolds 974,901 bp
Longest Scaffold 1,096,197 bp
Genome Size 4,053,234 bp
Protein Count 3,596
Coding Density 87.30%
GC Percentage 47.50%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM23443v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02435809
Country None
Date 2011-11-04
Genbank Assembly Accession GCA_000234435.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,784
Refseq Category na
Seq Rel Date 2011/11/04
Spanned Gaps 0
Species Taxid 666
SSU Count 8
Submitter Institute for Genome Sciences
Taxid 991938
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AGUQ00000000.1