Pseudoxanthomonas_A spadix
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Pseudoxanthomonas_A; s__Pseudoxanthomonas_A spadix
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Pseudoxanthomonas; s__Pseudoxanthomonas spadix
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Pseudoxanthomonas; s__Pseudoxanthomonas spadix; x__Pseudoxanthomonas spadix BD-a59
NCBI Strain Identifiers BD-a59
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003703395.1)
Genome Characteristics
CheckM Completeness 97.76%
CheckM Contamination 0.94%
CheckM Strain Heterogeneity 28.57
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1
N50 Contigs 3,452,554 bp
Longest Contig 3,452,554 bp
Scaffold Count 1
N50 Scaffolds 3,452,554 bp
Longest Scaffold 3,452,554 bp
Genome Size 3,452,554 bp
Protein Count 3,116
Coding Density 88.12%
GC Percentage 67.65%
Ambiguous Bases N/A
GTDB representative GCA_003703395.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM23391v4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02603133
Country South Korea
Date 2011-11-17
Genbank Assembly Accession GCA_000233915.4
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source BTEX contaminated soil
Latitude Longitude None
Molecule Count 1
CDS Count 3,099
Refseq Category representative genome
Seq Rel Date 2011/11/17
Spanned Gaps 0
Species Taxid 415229
SSU Count 1
Submitter Chung-Ang Univ.
Taxid 1045855
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None