Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae; x__Streptococcus pneumoniae NP112
NCBI Strain Identifiers NP112
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 6
23S Count 7
tRNA Count 20
Contig Count 9
N50 Contigs 582,976 bp
Longest Contig 727,976 bp
Scaffold Count 9
N50 Scaffolds 582,976 bp
Longest Scaffold 727,976 bp
Genome Size 2,072,320 bp
Protein Count 2,064
Coding Density 85.31%
GC Percentage 39.80%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM23320v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00792701
Country USA: Atlanta
Date 2011-10-25
Genbank Assembly Accession GCA_000233205.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharyngeal swab of healthy child between ages five months and five years old
Latitude Longitude None
Molecule Count N/A
CDS Count 2,143
Refseq Category na
Seq Rel Date 2011/10/25
Spanned Gaps 0
Species Taxid 1313
SSU Count 6
Submitter Institute for Genome Sciences
Taxid 760882
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AGQF00000000.1