Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae; x__Streptococcus pneumoniae Netherlands15B-37
NCBI Strain Identifiers Netherlands15B-37
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.76%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 5
tRNA Count 20
Contig Count 13
N50 Contigs 299,876 bp
Longest Contig 696,882 bp
Scaffold Count 13
N50 Scaffolds 299,876 bp
Longest Scaffold 696,882 bp
Genome Size 2,101,444 bp
Protein Count 2,105
Coding Density 85.67%
GC Percentage 39.57%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM23312v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00792697
Country Netherlands
Date 2011-10-25
Genbank Assembly Accession GCA_000233125.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cerebrospinal fluid [ENVO:02000029]
Latitude Longitude None
Molecule Count N/A
CDS Count 2,188
Refseq Category na
Seq Rel Date 2011/10/25
Spanned Gaps 0
Species Taxid 1313
SSU Count 3
Submitter Institute for Genome Sciences
Taxid 760888
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AGQB00000000.1