Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae; x__Streptococcus pneumoniae GA47439
NCBI Strain Identifiers GA47439
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.5%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 11
N50 Contigs 337,258 bp
Longest Contig 431,925 bp
Scaffold Count 11
N50 Scaffolds 337,258 bp
Longest Scaffold 431,925 bp
Genome Size 2,019,801 bp
Protein Count 1,993
Coding Density 84.96%
GC Percentage 39.82%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM23300v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00792666
Country USA: Georgia
Date 2011-10-25
Genbank Assembly Accession GCA_000233005.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood [ENVO:02000020]
Latitude Longitude None
Molecule Count N/A
CDS Count 2,157
Refseq Category na
Seq Rel Date 2011/10/25
Spanned Gaps 0
Species Taxid 1313
SSU Count 5
Submitter Institute for Genome Sciences
Taxid 760860
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AGPV00000000.1