Yersinia enterocolitica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia enterocolitica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia enterocolitica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia enterocolitica; sb__Yersinia enterocolitica subsp. palearctica; x__Yersinia enterocolitica subsp. palearctica PhRBD_Ye1
NCBI Strain Identifiers PhRBD_Ye1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_901472495.1)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 112
N50 Contigs 65,527 bp
Longest Contig 218,570 bp
Scaffold Count 112
N50 Scaffolds 65,527 bp
Longest Scaffold 218,570 bp
Genome Size 4,367,390 bp
Protein Count 4,032
Coding Density 85.19%
GC Percentage 46.94%
Ambiguous Bases N/A
GTDB representative GCA_901472495.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM23077v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02404397
Country Philippines
Date 2011-10-17
Genbank Assembly Accession GCA_000230775.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,073
Refseq Category na
Seq Rel Date 2011/10/17
Spanned Gaps 0
Species Taxid 630
SSU Count 1
Submitter St Luke's Medical Center - Quezon City
Taxid 1071969
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AGQO00000000.1