Streptococcus sobrinus
Isolate HQ 16S/23S 15 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus; x__Streptococcus sobrinus TCI-172
NCBI Strain Identifiers TCI-172
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000686605.1)
Genome Characteristics
CheckM Completeness 98.22%
CheckM Contamination 2.87%
CheckM Strain Heterogeneity 30.77
5S Count 0
16S Count 2
23S Count 4
tRNA Count 15
Contig Count 393
N50 Contigs 10,126 bp
Longest Contig 78,886 bp
Scaffold Count 393
N50 Scaffolds 10,126 bp
Longest Scaffold 78,886 bp
Genome Size 2,140,387 bp
Protein Count 2,278
Coding Density 83.44%
GC Percentage 43.40%
Ambiguous Bases N/A
GTDB representative GCA_000686605.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name SMUT5-NEX_8-172
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436544
Country Brazil
Date 2011-10-06
Genbank Assembly Accession GCA_000228605.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source dental plaque
Latitude Longitude None
Molecule Count N/A
CDS Count 2,271
Refseq Category na
Seq Rel Date 2011/10/06
Spanned Gaps 0
Species Taxid 1310
SSU Count 2
Submitter JCVI
Taxid 1074139
Total Gap Length 0
Translation Table 11
tRNA Count (total) 30
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AGHQ00000000.1