Streptococcus sobrinus
Isolate HQ 5S/23S 13 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus; x__Streptococcus sobrinus TCI-50
NCBI Strain Identifiers TCI-50
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000686605.1)
Genome Characteristics
CheckM Completeness 98.5%
CheckM Contamination 0.8%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 0
23S Count 1
tRNA Count 13
Contig Count 366
N50 Contigs 11,214 bp
Longest Contig 41,979 bp
Scaffold Count 366
N50 Scaffolds 11,214 bp
Longest Scaffold 41,979 bp
Genome Size 2,077,138 bp
Protein Count 2,181
Coding Density 83.34%
GC Percentage 43.49%
Ambiguous Bases 1
GTDB representative GCA_000686605.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name SMUT1-NEX_5-50
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436532
Country Brazil
Date 2011-10-06
Genbank Assembly Accession GCA_000227865.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source dental plaque
Latitude Longitude None
Molecule Count N/A
CDS Count 2,196
Refseq Category na
Seq Rel Date 2011/10/06
Spanned Gaps 0
Species Taxid 1310
SSU Count 1
Submitter JCVI
Taxid 1074056
Total Gap Length 0
Translation Table 11
tRNA Count (total) 27
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AGGF00000000.1