Streptococcus sobrinus
Isolate HQ 16S/23S 15 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sobrinus; x__Streptococcus sobrinus TCI-16
NCBI Strain Identifiers TCI-16
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000686605.1)
Genome Characteristics
CheckM Completeness 98.03%
CheckM Contamination 1.13%
CheckM Strain Heterogeneity 16.67
5S Count 0
16S Count 1
23S Count 1
tRNA Count 15
Contig Count 455
N50 Contigs 7,957 bp
Longest Contig 31,730 bp
Scaffold Count 455
N50 Scaffolds 7,957 bp
Longest Scaffold 31,730 bp
Genome Size 2,064,151 bp
Protein Count 2,222
Coding Density 83.40%
GC Percentage 43.52%
Ambiguous Bases 3
GTDB representative GCA_000686605.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name SMUT1-NEX_3-16
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436615
Country Brazil
Date 2011-10-06
Genbank Assembly Accession GCA_000227825.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source dental plaque
Latitude Longitude None
Molecule Count N/A
CDS Count 2,231
Refseq Category na
Seq Rel Date 2011/10/06
Spanned Gaps 0
Species Taxid 1310
SSU Count 1
Submitter JCVI
Taxid 1074054
Total Gap Length 0
Translation Table 11
tRNA Count (total) 29
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AGGD00000000.1