Aggregatibacter actinomycetemcomitans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans; x__Aggregatibacter actinomycetemcomitans serotype b str. SCC1398
NCBI Strain Identifiers SCC1398
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000372365.1)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 57
N50 Contigs 76,820 bp
Longest Contig 192,597 bp
Scaffold Count 34
N50 Scaffolds 105,697 bp
Longest Scaffold 220,380 bp
Genome Size 2,042,853 bp
Protein Count 2,000
Coding Density 87.91%
GC Percentage 44.41%
Ambiguous Bases N/A
GTDB representative GCA_000372365.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AaSCC1398v2.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471948
Country USA
Date 2015-7-30
Genbank Assembly Accession GCA_000226815.3
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source subject with localized aggressive periodontitis
Latitude Longitude None
Molecule Count N/A
CDS Count 2,031
Refseq Category na
Seq Rel Date 2015/07/30
Spanned Gaps 23
Species Taxid 714
SSU Count 1
Submitter Bumgarner laboratory, Department of Microbiology, University of Washington
Taxid 907491
Total Gap Length 1094
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AEJP00000000.2