Aggregatibacter actinomycetemcomitans_A
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans; x__Aggregatibacter actinomycetemcomitans serotype e str. SC1083
NCBI Strain Identifiers SC1083
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003130205.1)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 54
N50 Contigs 94,974 bp
Longest Contig 484,709 bp
Scaffold Count 54
N50 Scaffolds 94,974 bp
Longest Scaffold 484,709 bp
Genome Size 2,137,435 bp
Protein Count 2,080
Coding Density 87.88%
GC Percentage 44.56%
Ambiguous Bases N/A
GTDB representative GCA_003130205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM22675v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471943
Country None
Date 2011-9-29
Genbank Assembly Accession GCA_000226755.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Culture from dental plaque samples submitted by extramural dentists to the Oral Microbiology Testing Laboratory at the Hermans Ostrow School of Dentistry of USC. It is presumably from a periodontally diseased subjects but the periodontal diagnosis is unknown.
Latitude Longitude None
Molecule Count N/A
CDS Count 2,084
Refseq Category na
Seq Rel Date 2011/09/29
Spanned Gaps 0
Species Taxid 714
SSU Count 1
Submitter University of Southern California School of Dentistry
Taxid 907488
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AEJM00000000.1