Ligilactobacillus ruminis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Ligilactobacillus; s__Ligilactobacillus ruminis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus ruminis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus ruminis; x__Lactobacillus ruminis ATCC 27782
NCBI Strain Identifiers ATCC 27782
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900113455.1)
Genome Characteristics
CheckM Completeness 98.95%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 1
N50 Contigs 2,066,652 bp
Longest Contig 2,066,652 bp
Scaffold Count 1
N50 Scaffolds 2,066,652 bp
Longest Scaffold 2,066,652 bp
Genome Size 2,066,652 bp
Protein Count 1,987
Coding Density 83.40%
GC Percentage 43.47%
Ambiguous Bases 5
GTDB representative GCA_900113455.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM22498v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02603606
Country None
Date 2011-9-1
Genbank Assembly Accession GCA_000224985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 2,047
Refseq Category representative genome
Seq Rel Date 2011/09/01
Spanned Gaps 0
Species Taxid 1623
SSU Count 6
Submitter Microbiology Dept, University College Cork
Taxid 1069534
Total Gap Length 0
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None