Vibrio nigripulchritudo
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio nigripulchritudo
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio nigripulchritudo
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio nigripulchritudo; x__Vibrio nigripulchritudo ATCC 27043
NCBI Strain Identifiers ATCC 27043
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (17 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.77%
CheckM Contamination 2.9%
CheckM Strain Heterogeneity 3.33
5S Count 3
16S Count 1
23S Count 4
tRNA Count 18
Contig Count 332
N50 Contigs 35,691 bp
Longest Contig 226,863 bp
Scaffold Count 332
N50 Scaffolds 35,691 bp
Longest Scaffold 226,863 bp
Genome Size 6,113,582 bp
Protein Count 5,779
Coding Density 88.47%
GC Percentage 45.80%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM22268v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02951906
Country None
Date 2011-8-4
Genbank Assembly Accession GCA_000222685.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,695
Refseq Category na
Seq Rel Date 2011/08/04
Spanned Gaps 0
Species Taxid 28173
SSU Count 2
Submitter Food and Drug Administration
Taxid 1051649
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AFWJ00000000.1