Avibacterium paragallinarum
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Avibacterium; s__Avibacterium paragallinarum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Avibacterium; s__Avibacterium paragallinarum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Avibacterium; s__Avibacterium paragallinarum; x__Avibacterium paragallinarum 72
NCBI Strain Identifiers 72
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900450705.1)
Genome Characteristics
CheckM Completeness 99.58%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 3
tRNA Count 18
Contig Count 75
N50 Contigs 107,329 bp
Longest Contig 439,531 bp
Scaffold Count 75
N50 Scaffolds 107,329 bp
Longest Scaffold 439,531 bp
Genome Size 2,453,490 bp
Protein Count 2,393
Coding Density 88.81%
GC Percentage 40.78%
Ambiguous Bases N/A
GTDB representative GCA_900450705.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM22194v4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470228
Country Peru: Ica
Date 2013-6-28
Genbank Assembly Accession GCA_000221945.4
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source infraorbital sinuses of a broiler from an infectious coryza outbreak
Latitude Longitude None
Molecule Count N/A
CDS Count 2,351
Refseq Category na
Seq Rel Date 2013/06/28
Spanned Gaps 0
Species Taxid 728
SSU Count 1
Submitter Laboratory FARVET, Peru
Taxid 948565
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AFFP00000000.2