Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae HCUF01
NCBI Strain Identifiers HCUF01
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 10
23S Count 9
tRNA Count 19
Contig Count 22
N50 Contigs 803,985 bp
Longest Contig 982,447 bp
Scaffold Count 22
N50 Scaffolds 803,985 bp
Longest Scaffold 982,447 bp
Genome Size 4,067,550 bp
Protein Count 3,605
Coding Density 87.22%
GC Percentage 47.49%
Ambiguous Bases 1
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM22074v3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02435828
Country None
Date 2011-7-15
Genbank Assembly Accession GCA_000220745.3
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,814
Refseq Category na
Seq Rel Date 2011/07/15
Spanned Gaps 0
Species Taxid 666
SSU Count 10
Submitter Institute for Genome Sciences
Taxid 991930
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AFOO00000000.1