Treponema_G caldarium
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Spirochaetia; o__Treponematales; f__Treponemataceae_B; g__Treponema_G; s__Treponema_G caldarium
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema caldarium
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema caldarium; x__Treponema caldarium DSM 7334
NCBI Strain Identifiers DSM 7334
GTDB Type Material Designation type strain of species
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 98.86%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 1
N50 Contigs 3,239,340 bp
Longest Contig 3,239,340 bp
Scaffold Count 1
N50 Scaffolds 3,239,340 bp
Longest Scaffold 3,239,340 bp
Genome Size 3,239,340 bp
Protein Count 2,876
Coding Density 92.58%
GC Percentage 45.58%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM21972v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02232064
Country USA
Date 2011-6-30
Genbank Assembly Accession GCA_000219725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Hunter s Hot Spring
Latitude Longitude 42.22179 N 120.367935 W
Molecule Count 1
Protein Count 2,863
Refseq Category representative genome
Seq Rel Date 2011/06/30
Spanned Gaps 0
Species Taxid 215591
SSU Count 3
Submitter DOE Joint Genome Institute
Taxid 744872
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None