Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Lachnospirales; f__Lachnospiraceae; g__Dorea; s__Dorea scindens
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; x__unclassified Lachnospiraceae; s__Lachnospiraceae bacterium 5_1_57FAA
NCBI Strain Identifiers 5_1_57FAA
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_004295125.1)
Genome Characteristics
CheckM Completeness 99.22%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 5
23S Count 4
tRNA Count 20
Contig Count 64
N50 Contigs 107,968 bp
Longest Contig 269,782 bp
Scaffold Count 51
N50 Scaffolds 165,625 bp
Longest Scaffold 280,706 bp
Genome Size 3,339,557 bp
Protein Count 3,364
Coding Density 88.65%
GC Percentage 46.34%
Ambiguous Bases 3
GTDB representative GCA_004295125.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Lach_bact_5_1_57FAA
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02463775
Country None
Date 2011-6-15
Genbank Assembly Accession GCA_000218425.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 3,322
Refseq Category na
Seq Rel Date 2011/06/15
Spanned Gaps 13
Species Taxid 658085
SSU Count 4
Submitter Broad Institute
Taxid 658085
Total Gap Length 2584
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ACTR00000000.1