Thermodesulfatator indicus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Desulfobacterota; c__Thermodesulfobacteria; o__Thermodesulfobacteriales; f__Thermodesulfatatoraceae; g__Thermodesulfatator; s__Thermodesulfatator indicus
Filtered NCBI Taxonomy d__Bacteria; p__Thermodesulfobacteria; c__Thermodesulfobacteria; o__Thermodesulfobacteriales; f__Thermodesulfobacteriaceae; g__Thermodesulfatator; s__Thermodesulfatator indicus
Unfiltered NCBI Taxonomy d__Bacteria; p__Thermodesulfobacteria; c__Thermodesulfobacteria; o__Thermodesulfobacteriales; f__Thermodesulfobacteriaceae; g__Thermodesulfatator; s__Thermodesulfatator indicus; x__Thermodesulfatator indicus DSM 15286
NCBI Strain Identifiers DSM 15286
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.04%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 1
N50 Contigs 2,322,224 bp
Longest Contig 2,322,224 bp
Scaffold Count 1
N50 Scaffolds 2,322,224 bp
Longest Scaffold 2,322,224 bp
Genome Size 2,322,224 bp
Protein Count 2,246
Coding Density 90.68%
GC Percentage 42.43%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM21779v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02232057
Country Indian Ocean
Date 2011-6-10
Genbank Assembly Accession GCA_000217795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source deep-sea hydrothermal vent site at the Kairei vent field in the Central Indian Ridge
Latitude Longitude 25.316667 S 70.033355 E
Molecule Count 1
CDS Count 2,248
Refseq Category representative genome
Seq Rel Date 2011/06/10
Spanned Gaps 0
Species Taxid 171695
SSU Count 2
Submitter US DOE Joint Genome Institute (JGI-PGF)
Taxid 667014
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None