Halopiger xanaduensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacteriota; c__Halobacteria; o__Halobacteriales; f__Natrialbaceae; g__Halopiger; s__Halopiger xanaduensis
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Halobacteria; o__Natrialbales; f__Natrialbaceae; g__Halopiger; s__Halopiger xanaduensis
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Stenosarchaea group; c__Halobacteria; o__Natrialbales; f__Natrialbaceae; g__Halopiger; s__Halopiger xanaduensis; x__Halopiger xanaduensis SH-6
NCBI Strain Identifiers SH-6
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.57%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 4
N50 Contigs 3,668,009 bp
Longest Contig 3,668,009 bp
Scaffold Count 4
N50 Scaffolds 3,668,009 bp
Longest Scaffold 3,668,009 bp
Genome Size 4,355,268 bp
Protein Count 4,264
Coding Density 85.39%
GC Percentage 65.18%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM21771v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02232028
Country China
Date 2011-6-9
Genbank Assembly Accession GCA_000217715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sediment of Lake Shangmatala
Latitude Longitude 43.2 N 114.016 E
Molecule Count 4
CDS Count 4,178
Refseq Category representative genome
Seq Rel Date 2011/06/09
Spanned Gaps 0
Species Taxid 387343
SSU Count 3
Submitter US DOE Joint Genome Institute
Taxid 797210
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None