Leptospira interrogans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans; x__Leptospira interrogans serovar Copenhageni; x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV3096
NCBI Strain Identifiers Fiocruz LV3096
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900156205.1)
Genome Characteristics
CheckM Completeness 95.29%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 308
N50 Contigs 28,893 bp
Longest Contig 110,612 bp
Scaffold Count 291
N50 Scaffolds 30,551 bp
Longest Scaffold 110,612 bp
Genome Size 4,554,380 bp
Protein Count 3,664
Coding Density 76.00%
GC Percentage 34.97%
Ambiguous Bases 500
GTDB representative GCA_900156205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name CLC_glsol142
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00254356
Country Brazil: Salvador
Date 2011-06-07
Genbank Assembly Accession GCA_000216675.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,957
Refseq Category na
Seq Rel Date 2011/06/07
Spanned Gaps 17
Species Taxid 173
SSU Count 1
Submitter J. Craig Venter Institute
Taxid 996851
Total Gap Length 209
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AFLD00000000.1