Leptospira interrogans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans; x__Leptospira interrogans serovar Copenhageni; x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV3879
NCBI Strain Identifiers Fiocruz LV3879
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900156205.1)
Genome Characteristics
CheckM Completeness 96.47%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 290
N50 Contigs 30,156 bp
Longest Contig 95,829 bp
Scaffold Count 263
N50 Scaffolds 33,096 bp
Longest Scaffold 95,829 bp
Genome Size 4,552,227 bp
Protein Count 3,659
Coding Density 76.03%
GC Percentage 34.97%
Ambiguous Bases 547
GTDB representative GCA_900156205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name CLC_glsol158
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00254363
Country Brazil: Salvador
Date 2011-06-07
Genbank Assembly Accession GCA_000216515.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,955
Refseq Category na
Seq Rel Date 2011/06/07
Spanned Gaps 27
Species Taxid 173
SSU Count 1
Submitter J. Craig Venter Institute
Taxid 996859
Total Gap Length 362
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AFLL00000000.1