Leptospira interrogans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans; x__Leptospira interrogans serovar Copenhageni; x__Leptospira interrogans serovar Copenhageni str. R066
NCBI Strain Identifiers R066
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900156205.1)
Genome Characteristics
CheckM Completeness 96.47%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 297
N50 Contigs 28,921 bp
Longest Contig 97,869 bp
Scaffold Count 285
N50 Scaffolds 31,567 bp
Longest Scaffold 97,869 bp
Genome Size 4,549,934 bp
Protein Count 3,649
Coding Density 75.96%
GC Percentage 34.97%
Ambiguous Bases 559
GTDB representative GCA_900156205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name CLC_glsol165
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00254367
Country Colombia: Cali
Date 2011-06-07
Genbank Assembly Accession GCA_000216475.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,954
Refseq Category na
Seq Rel Date 2011/06/07
Spanned Gaps 12
Species Taxid 173
SSU Count 1
Submitter J. Craig Venter Institute
Taxid 996861
Total Gap Length 167
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AFLN00000000.1