Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa; x__Pseudomonas aeruginosa HB15
NCBI Strain Identifiers HB15
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 19
N50 Contigs 1,386,613 bp
Longest Contig 2,030,140 bp
Scaffold Count 19
N50 Scaffolds 1,386,613 bp
Longest Scaffold 2,030,140 bp
Genome Size 6,637,697 bp
Protein Count 6,056
Coding Density 89.42%
GC Percentage 66.24%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name PA15_miseq
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471890
Country None
Date 2013-11-6
Genbank Assembly Accession GCA_000215795.5
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with pneunomia
Latitude Longitude None
Molecule Count N/A
CDS Count 6,249
Refseq Category na
Seq Rel Date 2013/11/06
Spanned Gaps 0
Species Taxid 287
SSU Count 3
Submitter University of Minho
Taxid 983919
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AEVW00000000.3